PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P14890_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 222aa MW: 24672.5 Da PI: 8.4974

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P14890_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	66	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + +++G+g+W+ I+r + +Rt+ q+ s+ qky GSMUA_Achr7P14890_001 66 PWTEDEHKLFLLGLRKYGKGDWRNISRNFVITRTPTQVASHAQKY 110 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-11	57	111	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.995	59	115	IPR017930	Myb domain
SuperFamily	SSF46689	6.82E-17	61	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-17	62	113	IPR006447	Myb domain, plants
SMART	SM00717	3.7E-12	63	113	IPR001005	SANT/Myb domain
CDD	cd00167	4.73E-11	66	111	No hit	No description
Pfam	PF00249	2.6E-12	66	110	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MMTRPWMDVL PGKEAAPPHS YCTNWFVGQQ SSEGRSASGS WSQEENKWFE DALAKSSDHE 60 RKKGVPWTED EHKLFLLGLR KYGKGDWRNI SRNFVITRTP TQVASHAQKY FIRLNSGSKD 120 KRRSSIHDIT SVDFPDNRPP SPSSQPSTIT TQSSLALTPS LSGQFSAIAD PDQLGEVASG 180 FSPSSHGHRF MQCQFGTNPF GMNLLAQNPE TGKCDQVNLG IL

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226034	0.0	AC226034.1 Musa acuminata clone BAC MA4-18J6, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009409493.1	1e-112	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	4e-50	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	M0THM6	1e-165	M0THM6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P14890_001	1e-166	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7886	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	5e-45	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]