PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P15740_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 485aa MW: 53709.7 Da PI: 6.4662

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P15740_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.3e-32	254	308	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLHerFveav++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl GSMUA_Achr7P15740_001 254 KTRLRWTLELHERFVEAVNKLDGAEKATPKAVLNLMNVEGLTIYHVKSHLQKYRL 308 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.742	251	311	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-30	252	309	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-17	253	308	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-24	254	309	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	256	307	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-21	345	392	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MSSHSLTTAK QNNNPEGTKH FHHSSLLSVQ LSNQHDCKNL LDDRLSSTSP YRAQTELLKS 60 SSFKPGSPRS YVSHSQCSDH MFSRSSTFCT SLYSSSSAIS ESSRKLSSSP FLPHPPKCEK 120 QNSAVQLSSS PLLFNGDTSA RSCEDEHTDD LMKDFLNLSG DASDGSTHGE IYGNNGIALS 180 EQIELQLLSE QLGIAITDNG ESPRLDDIYE TPQVSSLPLS SNHNQAVQLS EPPAKVQLHS 240 SPSTATVSAS AANKTRLRWT LELHERFVEA VNKLDGAEKA TPKAVLNLMN VEGLTIYHVK 300 SHLQKYRLTK YIPEAKEDDK KASCPEDKKA PSVSDDNDLA KRRNIQVTEA LQMQIEVQKQ 360 LHEQLEVQRA LQLRIEENAK YLQKILEQQQ KARNPTSSTQ RSISEVPLEQ HSPAPDQSEV 420 GIDCSPPNSL KHKENDSESD SKSVKDCKRI RLEVSCTLAF LSGENFVHIF APPYLLSSPG 480 TFSDR

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MSSHSLTTAK QNNNPEGTKH FHHSSLLSVQ LSNQHDCKNL LDDRLSSTSP YRAQTELLKS  60
SSFKPGSPRS YVSHSQCSDH MFSRSSTFCT SLYSSSSAIS ESSRKLSSSP FLPHPPKCEK  120
QNSAVQLSSS PLLFNGDTSA RSCEDEHTDD LMKDFLNLSG DASDGSTHGE IYGNNGIALS  180
EQIELQLLSE QLGIAITDNG ESPRLDDIYE TPQVSSLPLS SNHNQAVQLS EPPAKVQLHS  240
SPSTATVSAS AANKTRLRWT LELHERFVEA VNKLDGAEKA TPKAVLNLMN VEGLTIYHVK  300
SHLQKYRLTK YIPEAKEDDK KASCPEDKKA PSVSDDNDLA KRRNIQVTEA LQMQIEVQKQ  360
LHEQLEVQRA LQLRIEENAK YLQKILEQQQ KARNPTSSTQ RSISEVPLEQ HSPAPDQSEV  420
GIDCSPPNSL KHKENDSESD SKSVKDCKRI RLEVSCTLAF LSGENFVHIF APPYLLSSPG  480
TFSDR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	254	311	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009409576.1	0.0	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_018684926.1	0.0	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_018684927.1	0.0	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	1e-111	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	M0THW1	0.0	M0THW1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P15740_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-74	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]