PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P15910_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 154aa MW: 18281.9 Da PI: 8.8793

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P15910_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.9e-19	44	98	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ ++++eql Le+ F+ ++++ ++e++eLA++l+L+ rqV vWFqNrRa++k GSMUA_Achr7P15910_001 44 RRKLRLSEEQLSLLEDSFRAHNTLAHDEKRELAQRLHLQPRQVEVWFQNRRARRK 98 567789***********************************************98 PP
2	HD-ZIP_I/II	113.6	1.2e-36	44	132	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ++k+rls+eq++lLE+sF+++++L +++K ela++L+lqprqv+vWFqnrRAR k+kq+E+d+e+L++++++l++en+rL++e eLr GSMUA_Achr7P15910_001 44 RRKLRLSEEQLSLLEDSFRAHNTLAHDEKRELAQRLHLQPRQVEVWFQNRRARRKLKQTEEDCESLRKCCQRLTNENRRLKRELMELR 131 59*************************************************************************************9 PP HD-ZIP_I/II 89 e 89 + GSMUA_Achr7P15910_001 132 A 132 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.75	40	100	IPR001356	Homeobox domain
SMART	SM00389	6.9E-17	42	104	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.22E-18	43	109	IPR009057	Homeodomain-like
CDD	cd00086	3.97E-12	44	101	No hit	No description
Pfam	PF00046	2.0E-16	44	98	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-17	49	98	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	75	98	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.0E-8	100	132	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.1E-10	100	143	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MIQEEECDVV LRLAVGGGEK TPVREISERL MRPANEREEA EGTRRKLRLS EEQLSLLEDS 60 FRAHNTLAHD EKRELAQRLH LQPRQVEVWF QNRRARRKLK QTEEDCESLR KCCQRLTNEN 120 RRLKRELMEL RAARLITCSS CEKIARDEKK TINS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	100	RRARRKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009409756.1	1e-105	PREDICTED: homeobox-leucine zipper protein HOX18-like
Swissprot	A2X674	1e-39	HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBL	M0THX8	1e-104	M0THX8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P15910_001	1e-105	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-29	HD-ZIP family protein