PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P16090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 223aa    MW: 24862.5 Da    PI: 7.53
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P16090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-3083142159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dgy+WrKYGqK+ ++++fpr+Y+rC++a +Cpvkkkv++saed++++  tYegeHnhe
  GSMUA_Achr7P16090_001  83 VKDGYQWRKYGQKVTRDNPFPRAYFRCSFApSCPVKKKVQKSAEDGSLLLATYEGEHNHE 142
                            58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-2977144IPR003657WRKY domain
PROSITE profilePS5081126.00478144IPR003657WRKY domain
SuperFamilySSF1182901.44E-2580144IPR003657WRKY domain
SMARTSM007749.6E-3583143IPR003657WRKY domain
PfamPF031062.1E-2484142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MCQLFVACTS LPTHLVRIPL VFQTRKLDDI IHKTSGADVP HGVCRPTSSS LILLESLVPI  60
QNPMPKTSKM YVRIDPTDSS LVVKDGYQWR KYGQKVTRDN PFPRAYFRCS FAPSCPVKKK  120
VQKSAEDGSL LLATYEGEHN HERPSRDDVY GFSDHSAAAV LPCPSIVVEH TSQPYDLDEV  180
EMPTLQRLLV EQMASALTKD PSFTAAIATA IYERMLGSPP AYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22821441374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409782.11e-117PREDICTED: WRKY transcription factor WRKY76 isoform X1
RefseqXP_009409784.11e-117PREDICTED: probable WRKY transcription factor 40 isoform X2
SwissprotQ6IEK58e-54WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLM0THZ61e-165M0THZ6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P16090_0011e-166(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-52WRKY DNA-binding protein 40