PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P16880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 379aa    MW: 42110.6 Da    PI: 6.7595
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P16880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.74.6e-21381312106
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL++cAe v+ gdl +a+++++ l   a+p+gd++ Rl+  f +AL+ r+ r        ++ps++s     +  +++ lf++++P
  GSMUA_Achr7P16880_001  38 RQLLISCAELVHCGDLPAAERAISILTAAAAPYGDSIDRLIRQFCRALSVRIGR--------VSPSAAS---LGSLQSSYLLFNQMTP 114
                            79****************************************************........6677776...7777789999****** PP

                   GRAS  90 ilkfshltaNqaIleav 106
                            +l+fshltaNqaIlea+
  GSMUA_Achr7P16880_001 115 FLRFSHLTANQAILEAA 131
                            ***************96 PP
2GRAS239.61.3e-73131378131373
                   GRAS 131 aLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvlq 209
                            a+a+R+  ++pp +Ri g gs    s e+l++tg+rL++fA++lg++f+f++l        +++  +++++ L+++p E+l+Vn+vl 
  GSMUA_Achr7P16880_001 131 AIADRSdpGDPPFIRISGTGS----SLETLQRTGDRLRNFAHSLGLEFQFHPLllppsvhSTNTSYNFTPSCLQFHPSETLVVNCVLF 214
                            6888987788***********....9***************************999996444477789******************** PP

                   GRAS 210 lhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                            lh+l +e+++ +   + +++L++++ ++P vv+v+e+e+ h+s sF++rf+eal+yy+a+f++lea+lp++seer+ vE+++lgrei+
  GSMUA_Achr7P16880_001 215 LHKLQREDGNDDGsrKLQAFLRTIRVMNPSVVTVAERETVHSSRSFMQRFVEALDYYTAVFEALEATLPPTSEERMAVEQVWLGREIE 302
                            *******99998766789********************************************************************** PP

                   GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                            ++v  eg+ rrerhe   +W + +++aGF++++ s++a++qa+lllr ++ s+gy+++  ++s++lgW++r L+svS+W
  GSMUA_Achr7P16880_001 303 SIVGGEGDGRRERHE---RWDSLMRDAGFSSLAPSTFAVSQARLLLRLHYpSEGYQLQLVRDSFLLGWHSRHLFSVSSW 378
                            *************99...9************************************************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.41511358IPR005202Transcription factor GRAS
PfamPF035144.6E-71131378IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLSSLKTDGG GAQDTHLHPD PHHPNPEPGL ISSTVNARQL LISCAELVHC GDLPAAERAI  60
SILTAAAAPY GDSIDRLIRQ FCRALSVRIG RVSPSAASLG SLQSSYLLFN QMTPFLRFSH  120
LTANQAILEA AIADRSDPGD PPFIRISGTG SSLETLQRTG DRLRNFAHSL GLEFQFHPLL  180
LPPSVHSTNT SYNFTPSCLQ FHPSETLVVN CVLFLHKLQR EDGNDDGSRK LQAFLRTIRV  240
MNPSVVTVAE RETVHSSRSF MQRFVEALDY YTAVFEALEA TLPPTSEERM AVEQVWLGRE  300
IESIVGGEGD GRRERHERWD SLMRDAGFSS LAPSTFAVSQ ARLLLRLHYP SEGYQLQLVR  360
DSFLLGWHSR HLFSVSSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-494437826378Protein SCARECROW
5b3h_A1e-494437825377Protein SCARECROW
5b3h_D1e-494437825377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409866.10.0PREDICTED: protein MONOCULM 1-like
TrEMBLM0TI750.0M0TI75_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P16880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-81GRAS family protein