PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 241aa    MW: 27194.1 Da    PI: 8.6018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-15855148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT++Ed++lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  GSMUA_Achr7P18200_001  8 KGPWTEQEDLQLVWFVRLFGERRWDILAKVSGLNRTGKSCRLRWVNYL 55
                           79********************************************97 PP
2Myb_DNA-binding55.21.6e-1761106148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rgr T++E+ l +d+++++G++ W++Iar+++ gRt++++k++w++++
  GSMUA_Achr7P18200_001  61 RGRLTPQEERLVLDLHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106
                            899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.35155IPR017930Myb domain
SuperFamilySSF466898.39E-287102IPR009057Homeodomain-like
SMARTSM007172.5E-13757IPR001005SANT/Myb domain
PfamPF002497.6E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-19962IPR009057Homeodomain-like
CDDcd001676.23E-101055No hitNo description
PROSITE profilePS5129427.00356110IPR017930Myb domain
SMARTSM007172.7E-1660108IPR001005SANT/Myb domain
PfamPF002492.3E-1561105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2463109IPR009057Homeodomain-like
CDDcd001673.17E-1265106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEATQPRKGP WTEQEDLQLV WFVRLFGERR WDILAKVSGL NRTGKSCRLR WVNYLHPGLK  60
RGRLTPQEER LVLDLHAKWG NRWSRIARRL PGRTDNEIKN YWRTHMRRKA QERNRSACPS  120
PSSSSVDGPQ LGIEKPGGGS VAGGNSLISG LGVNDEVAKG YTMDQIWNEI AASASASGLS  180
FEEEQDCPPM PCSMWGVDDE DTRMLNPMPL LAFPYQSSIV ESQSPLLCCL HISKLVLLLL  240
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-2881104105C-Myb DNA-Binding Domain
1msf_C5e-2881104105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410020.11e-158PREDICTED: myb-related protein MYBAS1-like
SwissprotQ53NK65e-76MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLM0TIK71e-177M0TIK7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18200_0011e-178(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-71myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]