PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 193aa    MW: 22052.2 Da    PI: 9.1217
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.73.1e-21666257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++R+++t+eql +Leel+++  r+p+a+++++++++l    +++ ++V++WFqN++a+e++
  GSMUA_Achr7P18230_001  6 STRWCPTPEQLMILEELYRSgVRTPDASQIQQITAHLsrygRIEGKNVFYWFQNHKARERQ 66
                           58*****************99**************************************97 PP
2Wus_type_Homeobox122.61.5e-39567264
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                           ++tRW+PtpeQ++iLeely+sG+rtP +++iq+ita+L++yG+ie+kNVfyWFQN+kaRerqk
  GSMUA_Achr7P18230_001  5 PSTRWCPTPEQLMILEELYRSGVRTPDASQIQQITAHLSRYGRIEGKNVFYWFQNHKARERQK 67
                           589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.301267IPR001356Homeobox domain
SMARTSM003891.2E-5471IPR001356Homeobox domain
CDDcd000864.43E-5567No hitNo description
SuperFamilySSF466895.13E-12570IPR009057Homeodomain-like
PfamPF000467.0E-19666IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-8866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MPQAPSTRWC PTPEQLMILE ELYRSGVRTP DASQIQQITA HLSRYGRIEG KNVFYWFQNH  60
KARERQKLRR RLSIHHHLLC SGYPLALFPR RQLHCFQDAP LLHHHIPTSH FPHQDADATQ  120
GLDLLCKLET KGDQVTALTN STLNGHEWLA KMDIHSTNPP CCKPLKTLDL FPTKSTGLKD  180
ECTTSKSRSA SPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8624972e-74JQ862497.1 Heliconia orthotricha microsatellite HoB5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684347.11e-140PREDICTED: WUSCHEL-related homeobox 3B-like
TrEMBLM0TIL01e-142M0TIL0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18230_0011e-142(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-37WOX family protein