PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 470aa    MW: 51953.7 Da    PI: 9.4703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.1e-16116161147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg W + Ed +l++ v+++G+ +W++Ia+++  gR++k+c++rw++ 
  GSMUA_Achr7P18390_001 116 RGHWRPAEDSKLKEMVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 161
                            899*****************************.***********996 PP
2Myb_DNA-binding53.55.4e-17168212147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r ++T+eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ +
  GSMUA_Achr7P18390_001 168 RRPFTEEEEEKLMTAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHVV 212
                            679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.393111162IPR017930Myb domain
SMARTSM007174.5E-14115164IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-28116209IPR009057Homeodomain-like
PfamPF002492.9E-15116161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-25117169IPR009057Homeodomain-like
CDDcd001676.14E-13119160No hitNo description
PROSITE profilePS5129426.042163217IPR017930Myb domain
SMARTSM007171.1E-14167215IPR001005SANT/Myb domain
PfamPF002491.1E-13168211IPR001005SANT/Myb domain
CDDcd001671.44E-11170213No hitNo description
Gene3DG3DSA:1.10.10.609.5E-21170216IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MASRCRADSS CSSSSKGVVA ETASLSINPT SSAESHQYCS KGSRTTCWTF PFTDSCLSLQ  60
ENRREKSEVA HPKCCYGENL VAEGIEDDSP DDENVVGDPS GGSGAADSGQ SKVCARGHWR  120
PAEDSKLKEM VALYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRP FTEEEEEKLM  180
TAHRFYGNKW AMIARLFPGR TDNAVKNHWH VVMARKYREQ SAAYRRRKLG QEVLHHHRLD  240
EAAAAKATAA PRTAYGSTSG SFPSFPFLAA VDASAGAHHM PHYSGDSLSN CSGFSAEGTP  300
FDFFSGTCRL SSPPPLLPCA SATACSQSSS TLNTTHLLLH VWVSPLNFLK MGVEITSRSS  360
KKLSRERGQN MRRLSLNLKE DLMMASLPLS LVVFGSEHLQ ITRFTRRKAS TATCHRTCRL  420
LSPSWALTII LRSARRCSDR ATYPTSLPLR HHLKTTARAA TLMPQSHQLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321162167107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4661181e-174GQ466118.1 Musa balbisiana microsatellite Mbg26 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410160.10.0PREDICTED: myb-like protein Q
TrEMBLM0TIM60.0M0TIM6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.14e-73myb domain protein 117