PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 357aa    MW: 39567.2 Da    PI: 6.2903
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.6e-184895148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  GSMUA_Achr7P18410_001 48 KGPWTPEEDQKLLAYIEKHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 95
                           79********************************************97 PP
2Myb_DNA-binding521.6e-16101146148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg ++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  GSMUA_Achr7P18410_001 101 RGEFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 146
                            899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-263998IPR009057Homeodomain-like
PROSITE profilePS5129418.2064395IPR017930Myb domain
SuperFamilySSF466895.14E-3145142IPR009057Homeodomain-like
SMARTSM007171.8E-144797IPR001005SANT/Myb domain
PfamPF002498.1E-174895IPR001005SANT/Myb domain
CDDcd001671.74E-115095No hitNo description
PROSITE profilePS5129425.22596150IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2699150IPR009057Homeodomain-like
SMARTSM007171.1E-16100148IPR001005SANT/Myb domain
PfamPF002491.1E-15101146IPR001005SANT/Myb domain
CDDcd001672.80E-11103146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDVRFTVHPD ESSNGDAIYQ WFSYTIFCRE DLSEMGRSPC CEKIGLKKGP WTPEEDQKLL  60
AYIEKHGHGS WRALPAKAGL QRCGKSCRLR WTNYLRPDIK RGEFSLQEEQ TIIQLHALLG  120
NRWSAIATHL PKRTDNEIKN YWNTHLKKRL AKMGIDPCTH KAKIDTLSSA NGHPKKVANL  180
SHMAQWESAR LEAEARLARE SKLRAASNST ILPQQQQMGT SSSSIDLESP TSTLSLAENW  240
LPIMASGTEL VDGNAPAEAA ATHQEGFSME AFGSEAPWLS EPYTSQAGYS WGQLGAGFTA  300
MLLGDSGGQN TSDSCVQEEE EEATGLVERE GNKTYWNTIL NSVNSSASSN SPPVFYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27461505108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410047.20.0PREDICTED: myb-related protein 306-like
SwissprotQ9LE631e-118MY106_ARATH; Transcription factor MYB106
TrEMBLM0TIM80.0M0TIM8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-100myb domain protein 106