PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P18900_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 219aa MW: 24775 Da PI: 8.7294

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P18900_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	100.9	1.2e-31	1	85	9	102
HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 ++ed+ ++++isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv ++ weF++++F++g+++ll+k GSMUA_Achr7P18900_001 1 MVEDNVTDDVISWGKTGTSFVVWKPVEFARDLLPVHFKHNNFSSFVRQLNTYGFHKVVPDR---------WEFANDNFRQGEQRLLCK 79 89*******************************************************99.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k GSMUA_Achr7P18900_001 80 IRRRKA 85 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	6.8E-32	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.2E-44	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.45E-29	1	83	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.8E-28	1	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-9	32	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	33	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.3E-9	45	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MVEDNVTDDV ISWGKTGTSF VVWKPVEFAR DLLPVHFKHN NFSSFVRQLN TYGFHKVVPD 60 RWEFANDNFR QGEQRLLCKI RRRKAALPQV PSAGKASADR NNRPPPSPLS NSGEAHSSST 120 ASLLPPSEHL LELTHENEKL RMDNQILSTE LAQAKRQYRE LLASLSNFVD VSQPNLSVLM 180 QEKSALSVSS PLLSAQHILF FPTLTLYREN SCFIVDTAR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	2e-17	1	83	12	105	Heat shock factor protein 2
5d8l_B	2e-17	1	83	12	105	Heat shock factor protein 2
5d8l_D	2e-17	1	83	12	105	Heat shock factor protein 2
5d8l_F	2e-17	1	83	12	105	Heat shock factor protein 2
5d8l_H	2e-17	1	83	12	105	Heat shock factor protein 2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410099.1	1e-136	PREDICTED: heat stress transcription factor B-1-like
Refseq	XP_009410100.1	1e-136	PREDICTED: heat stress transcription factor B-1-like
Refseq	XP_018684735.1	1e-136	PREDICTED: heat stress transcription factor B-1-like
Swissprot	Q67TP9	5e-63	HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBL	M0TIS7	1e-160	M0TIS7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P18900_001	1e-161	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	2e-46	heat shock factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Grand X, et al. Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns. Plant Biotechnol. J., 2012. 10(7): p. 840-50 [PMID:22607456]