PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P18930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 139aa    MW: 15859.7 Da    PI: 10.1328
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P18930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-201160255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f taeeAa+a++ a+ +++g
  GSMUA_Achr7P18930_001 11 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFNTAEEAARAYDMAAIEFRG 60
                           8********.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-141160IPR001471AP2/ERF domain
PROSITE profilePS5103225.2111168IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-231169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-321168IPR001471AP2/ERF domain
SMARTSM003801.8E-361174IPR001471AP2/ERF domain
PRINTSPR003671.4E-111223IPR001471AP2/ERF domain
CDDcd000182.00E-291468No hitNo description
PRINTSPR003671.4E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MQVRRRKKKN KYRGVRQRPW GKWAAEIRDP RRAVRKWLGT FNTAEEAARA YDMAAIEFRG  60
ARAKLNFPFP EQPPALGGDQ GTSQSTSLSS SHQPQQQGFG EQQKQQVVMD HQGQELIDLW  120
AGIQDLMALD DEELYNGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-22869264ATERF1
3gcc_A7e-22869264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275272e-51KJ727527.1 Zea mays clone pUT5387 AP2-EREBP transcription factor (EREB172) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410105.12e-99PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLM0TIT04e-98M0TIT0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P18930_0016e-99(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-24ethylene-responsive element binding protein