PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P19800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 363aa    MW: 40522.7 Da    PI: 5.9281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P19800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.6e-20114163255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+G+rw++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a ++k++g
  GSMUA_Achr7P19800_001 114 QYRGIRWRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARKIRG 163
                            69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-31114172IPR001471AP2/ERF domain
CDDcd000184.31E-33114172No hitNo description
SMARTSM003804.1E-36114177IPR001471AP2/ERF domain
PROSITE profilePS5103223.802114171IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-23114172IPR016177DNA-binding domain
PRINTSPR003676.0E-11115126IPR001471AP2/ERF domain
PfamPF008473.5E-12115163IPR001471AP2/ERF domain
PRINTSPR003676.0E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCGGAIISDY IPAGAGPLRV TTDCLWPDPN NGCGMKAGEK KKKRRRSGRG RRLPAEETDD  60
DFEADFQEFE EDGEVDLFHI ESFALTSEDK PVPTRPSEVD VPASRSAKRY RKNQYRGIRW  120
RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDAEARK IRGKKAKLNF PDGSLPCVQK  180
SLPKLAASRT SKTEMPNYNK CFNHLYDPFQ DFCSSFDFIE VDPIIQSEKL SSFPEIKPAP  240
PTVVAGMNLQ SDLHEIKTPE ITSVISPTIS EVEETACLEK GVAPKKLKNN VGRAVPTKES  300
AAGKPSKELS AYEPYMKFLQ ITYLQPSTDD SIDNLLGGDL TQDFSSVDLW SFDNLPQLGS  360
SIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20114171260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-201131711372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944KKKKRR
23945KKKKRRR
34045KKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3407710.0JQ340771.1 Musa acuminata AAA Group ERF2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410253.10.0PREDICTED: ethylene-responsive transcription factor 1
TrEMBLM0TJ170.0M0TJ17_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P19800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-31related to AP2 2