PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P20100_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 358aa MW: 39583.9 Da PI: 4.9063

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P20100_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00013	54	71	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h+++E+rRR++iN++ GSMUA_Achr7P20100_001 54 RSKHSAMEQRRRNKINDR 71 899*************96 PP
2	HLH	25.5	2.4e-08	87	118	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq GSMUA_Achr7P20100_001 87 FQILRELIPHS----DQKRDKASFLLEVIEYIQFLQ 118 89******9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.5E-21	52	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.287	52	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-13	52	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.50E-14	54	122	No hit	No description
SMART	SM00353	2.3E-6	58	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	87	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MEAAASRSGR GFDDEDDDDQ EFAKREGFFF SHKDLTIKAD GKGSGTDDLP TTPRSKHSAM 60 EQRRRNKIND RQARPPAFLM EDKFCLFQIL RELIPHSDQK RDKASFLLEV IEYIQFLQEK 120 VQKYESSYPG WNQDNAKLMP WVKVYYRSFW KNAQNNNQTP VDGLSDPSQV IRNGSAPPAS 180 VFAGQFDEND IPAAPAMLSN APNPTQLDMT TGVPYKIMET ATGFAIADNM PSQAQPHWLG 240 SSSPADCAVS SEMLNEQEEL IIDEGTINAS ASYSQGLLTS LTQTLQSSGV DLSQANISVQ 300 INLGKRATNR RPTATTALSN YKDPDDPAST NQAVGRSMMG ITNQESSQAA KRHKADNC

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MEAAASRSGR GFDDEDDDDQ EFAKREGFFF SHKDLTIKAD GKGSGTDDLP TTPRSKHSAM  60
EQRRRNKIND RQARPPAFLM EDKFCLFQIL RELIPHSDQK RDKASFLLEV IEYIQFLQEK  120
VQKYESSYPG WNQDNAKLMP WVKVYYRSFW KNAQNNNQTP VDGLSDPSQV IRNGSAPPAS  180
VFAGQFDEND IPAAPAMLSN APNPTQLDMT TGVPYKIMET ATGFAIADNM PSQAQPHWLG  240
SSSPADCAVS SEMLNEQEEL IIDEGTINAS ASYSQGLLTS LTQTLQSSGV DLSQANISVQ  300
INLGKRATNR RPTATTALSN YKDPDDPAST NQAVGRSMMG ITNQESSQAA KRHKADNC

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410295.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
TrEMBL	M0TJ47	0.0	M0TJ47_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P20100_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	3e-51	BES1-interacting Myc-like protein 2