PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P20620_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 332aa MW: 36431.5 Da PI: 9.6534

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P20620_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.9	1.1e-41	141	218	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yh+rhkvCevhsk++++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ GSMUA_Achr7P20620_001 141 MCQVDDCKADLSSAKDYHKRHKVCEVHSKTAKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 218 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.5E-34	135	203	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.881	139	216	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.49E-38	140	219	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-30	142	215	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEGEVGAQVA PSVFFRQHQA LPGSFHEAPL LAKKRDFPWK NNPNFPHGQE QEIQRHRLLG 60 SSLPSHGGNW NPRMWDWDGV RFTAQPSTDA SEVLHLGNLA EDDQNLSLKL GGGAYTGDEP 120 AARPNKRVRS GLPGSSGNYP MCQVDDCKAD LSSAKDYHKR HKVCEVHSKT AKALVGKQMQ 180 RFCQQCSRFH PLSEFDEGKR SCRRRLAGHN RRRRKTQPED ASSKLLPPRI QESTTNGNLD 240 ISFEQSLKKN SQENAPSTTD LLTALSAALA ASAPNGPVSL SQGSSESSGN NKAKIQNAEP 300 PTDVNSHNKS THIHPSTGVL TKKCTDRTGI YG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-32	131	215	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410346.1	1e-177	PREDICTED: squamosa promoter-binding-like protein 15
Swissprot	Q8RY95	9e-66	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	M0TJ99	0.0	M0TJ99_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P20620_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5456	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	2e-56	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]