PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P20800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 151aa    MW: 15937.6 Da    PI: 8.027
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P20800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-174492355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  GSMUA_Achr7P20800_001 44 FRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVYCLRG 92
                           8*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-3143101IPR001471AP2/ERF domain
PROSITE profilePS5103222.53743100IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2243102IPR016177DNA-binding domain
SMARTSM003801.7E-3543106IPR001471AP2/ERF domain
PfamPF008472.4E-104492IPR001471AP2/ERF domain
CDDcd000181.03E-2744101No hitNo description
PRINTSPR003671.6E-114455IPR001471AP2/ERF domain
PRINTSPR003671.6E-1182102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEGQLCSTSN SGEPRKPPPP GAGRRVTGGS EGDGGGGGGS DRTFRGVRMR KWGKWVAEIR  60
EPNKRSRIWL GSYSTAVAAA RAYDTAVYCL RGRSARLNFP DEILAEDLEA ESFSGSGGAG  120
TCAMSAASIR KKATENPDLN QEPAPESSDV D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1734103475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410362.13e-98PREDICTED: ethylene-responsive transcription factor RAP2-9-like
SwissprotQ8LC306e-35RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
SwissprotQ9FH946e-35ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLM0TJB71e-104M0TJB7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P20800_0011e-105(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.12e-23related to AP2 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]