PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P20950_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 236aa MW: 27412.7 Da PI: 6.874

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P20950_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62	8.9e-20	68	121	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe+ ++++a+++ eLA+ lgL+ rqV vWFqNrRa++k GSMUA_Achr7P20950_001 68 KKRRLNSEQVRTLERNFEMGNKLDADRKMELARALGLQPRQVAVWFQNRRARWK 121 45689************************************************9 PP
2	HD-ZIP_I/II	117.9	5.8e-38	67	157	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl++eqv++LE++Fe+ +kL+ +rK+elar+LglqprqvavWFqnrRAR+k kqlEkd++ Lkr+++ +k+ene+L++ +++L GSMUA_Achr7P20950_001 67 EKKRRLNSEQVRTLERNFEMGNKLDADRKMELARALGLQPRQVAVWFQNRRARWKIKQLEKDHDELKRQLEIMKTENEALQARNKKLL 154 69*************************************************************************************9 PP HD-ZIP_I/II 89 eel 91 +el GSMUA_Achr7P20950_001 155 SEL 157 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-20	59	124	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	63	123	IPR001356	Homeobox domain
SMART	SM00389	1.2E-19	66	127	IPR001356	Homeobox domain
Pfam	PF00046	4.2E-17	68	121	IPR001356	Homeobox domain
CDD	cd00086	2.60E-15	68	124	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-20	74	121	IPR009057	Homeodomain-like
PRINTS	PR00031	2.6E-6	94	103	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	98	121	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.6E-6	103	119	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.9E-7	123	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MACNRMPLFF PANLVLQTAH EENHQQQLHT STCGMGNRSI PFSRVEACEE MNVEEDLSDD 60 ALQPGGEKKR RLNSEQVRTL ERNFEMGNKL DADRKMELAR ALGLQPRQVA VWFQNRRARW 120 KIKQLEKDHD ELKRQLEIMK TENEALQARN KKLLSELLAL KDREPSEPIN LNKETEGSSS 180 SDTDLDFSRR RPSSVSQPRR SSKSETAKNE GFCNMFCNTD EQSALWAWSE QHNYHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	123	RRARWKIKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410378.2	1e-170	PREDICTED: homeobox-leucine zipper protein ATHB-23-like
Swissprot	Q8LC03	5e-70	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	M0TJD2	1e-175	M0TJD2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P20950_001	1e-175	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26960.1	7e-68	homeobox protein 23

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]