PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P21740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 1124aa    MW: 126017 Da    PI: 8.5031
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P21740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151661147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W + Ed +l d+v+++G+ +W+ Ia +++ gR++k+c++rw++ 
  GSMUA_Achr7P21740_001 16 RGHWKPSEDAKLMDLVARYGPQNWNFIADKLN-GRSGKSCRLRWFNQ 61
                           899*****************************.***********996 PP
2Myb_DNA-binding431e-1369112247
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             ++++eE+e+lv  ++ +G++ W++ ar ++ gRt++ +k+ w+ +
  GSMUA_Achr7P21740_001  69 TAFSEEEEEKLVASHRIYGNK-WALMARLFP-GRTDNAVKNQWHVL 112
                            689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6591166IPR017930Myb domain
SMARTSM007171.7E-121564IPR001005SANT/Myb domain
SuperFamilySSF466892.5E-2615109IPR009057Homeodomain-like
PfamPF002493.3E-151661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-251769IPR009057Homeodomain-like
CDDcd001673.66E-111960No hitNo description
PROSITE profilePS5129417.39167117IPR017930Myb domain
SMARTSM007178.2E-1467115IPR001005SANT/Myb domain
PfamPF002498.0E-1169112IPR001005SANT/Myb domain
CDDcd001671.19E-970113No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1870116IPR009057Homeodomain-like
Gene3DG3DSA:4.10.1060.104.7E-13635668IPR001876Zinc finger, RanBP2-type
SuperFamilySSF902091.24E-7635668IPR001876Zinc finger, RanBP2-type
PROSITE profilePS501999.969638667IPR001876Zinc finger, RanBP2-type
PfamPF006412.3E-6639662IPR001876Zinc finger, RanBP2-type
SMARTSM005471.5E-4640664IPR001876Zinc finger, RanBP2-type
PROSITE patternPS013580642661IPR001876Zinc finger, RanBP2-type
SuperFamilySSF902091.73E-5669701IPR001876Zinc finger, RanBP2-type
Gene3DG3DSA:4.10.1060.102.0E-9671700IPR001876Zinc finger, RanBP2-type
PROSITE profilePS501999.732671700IPR001876Zinc finger, RanBP2-type
PfamPF006413.3E-7672700IPR001876Zinc finger, RanBP2-type
SMARTSM005476.9E-4673697IPR001876Zinc finger, RanBP2-type
PROSITE patternPS013580675694IPR001876Zinc finger, RanBP2-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:1900871Biological Processchloroplast mRNA modification
GO:0009570Cellular Componentchloroplast stroma
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1124 aa     Download sequence    Send to blast
MSSGRRDHGQ AKLCVRGHWK PSEDAKLMDL VARYGPQNWN FIADKLNGRS GKSCRLRWFN  60
QLDPKINKTA FSEEEEEKLV ASHRIYGNKW ALMARLFPGR TDNAVKNQWH VLMARKEREQ  120
GSGCRRRKAL PQRTEVSRGH NNAWSGESSI TSSRDESSST CTGSRAMPCF LKDFGMAQQQ  180
QPLQLCFGSG YSFGNETSEG SAVDHCSNGF LPSETDGDRK KKCIPFIDFM VYWIWLFSGC  240
YFGSIPHPLI SVRIRIRIRI RYWSSNLSII SDSETGCIWH ILLLKGDLDL DLSHHRSLSS  300
LVVPKVVTST SVVCRGHPNC YNLHALHKLR REAPPPKTLV LSLSSLSKVF APPPLMGGVA  360
RLLVLLATPF PRPSALRLSR HLAVPLAALS AAASTASSYS SHHFRPLHPR LRLGFSVVTA  420
ERFHTQLAGA RDDHGEAVAS APTSHAGSMR SWPEWRKLVD YLVAGGYYDR QDSVAVGEED  480
DDSLLAGEDL TEEFVKAAQA CLSFARDKPD LLRMLAKKDI EIIVENGSPF LFKNGANSVR  540
RLQSFVVADG TKVLESERAQ TVDIMRYLLS YACSSTATRD ESFLTTRDLT ETAIRSLLAQ  600
LFRLSVTNPE ARLTEMTPRQ TVTKQHFSRP TWQTIEMKRG DWICPKCSFM NFARNMGCLE  660
CNEARPKKIL SDGEWECPQC DFFNFSRNMS CLRCDFKRPG GSPFGTASSD AHLGYNGSST  720
VEQILKRSNL DKSEIERKLA ANDEKAERWF SKISQLDDSA DLSSAIDDED FPEIMPMRKG  780
MNRFVVSTRK TPLERRLANA QNRSNLGNSG FSEGHELQPG RSNGMNSHKP SESSISQMTD  840
PDSVPFVPLP ADMFSKNSNP DNKQSLNTED SASPKASQLG DPVFKESESS AESRDSDSFD  900
ASKGWSKKVT ELDNVRDMAN AISDDDFPEI MPMRKGENRF IVSKKKDRSL TSLQYKRRIA  960
MEQANSGNFV PFVPFPPDYF AKKDKQPETS PTEGSTLHEK ARSETEKSEE SMTGTENSKS  1020
ASEGWKPSFS GKSLEGSAVT EPDPLDMSEE AKAARWFRRA AQIKDISELS NIPDEDFPEI  1080
MPMRKGVNRF VVSKRKTPLE RRLTSPQYRR SLPIVRSEPD EDAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30151166107B-MYB
1mse_C2e-30131161104C-Myb DNA-Binding Domain
1msf_C2e-30131161104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410474.10.0PREDICTED: zinc finger protein VAR3, chloroplastic
TrEMBLM0TJL00.0M0TJL0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P21740_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-58myb domain protein 105