PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P21980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 247aa    MW: 27710 Da    PI: 9.768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P21980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-2099148255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +grW+AeIrdp++   rkr++lg+f+taeeAa  ++ a+ +l+g
  GSMUA_Achr7P21980_001  99 KFRGVRRRP-WGRWAAEIRDPRQ---RKRVWLGTFDTAEEAATVYDMAAVRLKG 148
                            89*******.**********954...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.4E-533247IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.105.7E-3098157IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2299157IPR016177DNA-binding domain
PfamPF008474.5E-1399148IPR001471AP2/ERF domain
SMARTSM003805.2E-3699162IPR001471AP2/ERF domain
PROSITE profilePS5103224.72499156IPR001471AP2/ERF domain
PRINTSPR003671.6E-10100111IPR001471AP2/ERF domain
CDDcd000186.46E-23107158No hitNo description
PRINTSPR003671.6E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDRREELKFS EHVVKTRKTI LPKRAASRGS ECRKRVVRIH FDDVDATDSS SSDGECGARR  60
LVRRQVHEIG IEVVPVPRRR AAVTRKETAA RGGESGRRKF RGVRRRPWGR WAAEIRDPRQ  120
RKRVWLGTFD TAEEAATVYD MAAVRLKGSK AVTNFPAARP AAQTTEEEEA KCEVRGGGGG  180
VTGARSSPTS VLHYGDEWAP FDYTGNDEVD PFGFGADASP LFFTEYCRPT RRLLQAEFGD  240
FDAEDFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2092156972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684565.11e-178PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLM0TJN41e-177M0TJN4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P21980_0011e-178(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-22cytokinin response factor 4