PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P22020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 227aa    MW: 25337.1 Da    PI: 5.8789
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P22020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.15.4e-2170132259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK+++++ +pr YY+Ct++   gCp++k v++++   dp ++ + Y+ +H+++
  GSMUA_Achr7P22020_001  70 EDGYQWRKYGQKTINDAMYPRCYYKCTYRddqGCPATKTVQQQDsyADPPTFMVEYSMKHTCK 132
                            7***************************99999*******9875226**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-2356134IPR003657WRKY domain
SuperFamilySSF1182903.4E-2164134IPR003657WRKY domain
SMARTSM007748.5E-3169133IPR003657WRKY domain
PfamPF031063.4E-2370132IPR003657WRKY domain
PROSITE profilePS5081118.79770134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAKQILQLTT SALSTLQFCG CGASDDGGTG NCSGELSKSS EGRDGPHGRR TSCRRKNKTS  60
TKVKTTVPYE DGYQWRKYGQ KTINDAMYPR CYYKCTYRDD QGCPATKTVQ QQDSYADPPT  120
FMVEYSMKHT CKTPQTIFPV LMVESSPQKA SLHGSDSTGS SDLQDLHLSP PSSVVTHSES  180
HDKCSSSNEQ EQPCQHEGLI TVNTLDELDM ESMDLFMRNF DGWFYVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-1270132969OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411190.11e-168PREDICTED: probable WRKY transcription factor 70
TrEMBLM0TJN81e-170M0TJN8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P22020_0011e-171(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.13e-18ABA overly sensitive mutant 3