PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P22200_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 211aa MW: 23029.4 Da PI: 9.5426

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P22200_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.6	1.6e-41	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca+dC++apyf ++p++fa vhk+FGasn++k+l ++pe++r da++slvyeA+ r+rdP+yG++g i++lqqq++ GSMUA_Achr7P22200_001 41 PCAACKLLRRRCAQDCPFAPYFSPHEPQRFASVHKVFGASNISKMLLEVPESQRADAANSLVYEANLRLRDPIYGCMGAISALQQQVQ 128 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 l+ el+++++e GSMUA_Achr7P22200_001 129 ALELELQAVRAE 140 *****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.614	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-41	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSTPRERIEE VGKKIKREAD VVTDRTGRRL SLVGTINTIT PCAACKLLRR RCAQDCPFAP 60 YFSPHEPQRF ASVHKVFGAS NISKMLLEVP ESQRADAANS LVYEANLRLR DPIYGCMGAI 120 SALQQQVQAL ELELQAVRAE ILKHKFRQAS AGVIRTSHAA FLAPSEGVSM AAPPPRSVTS 180 PPPALGSSSS FIYTSLDSSA ITMNHNTLYF G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	41	144	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	41	144	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411193.1	1e-155	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	4e-74	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	M0TJQ6	1e-154	M0TJQ6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P22200_001	1e-155	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	9e-73	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]