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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | GSMUA_Achr7P23690_001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family | MIKC_MADS | ||||||||
| Protein Properties | Length: 239aa MW: 27692.2 Da PI: 9.3177 | ||||||||
| Description | MIKC_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 95.5 | 2.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyeys+
GSMUA_Achr7P23690_001 9 KRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYSN 59
79***********************************************95 PP
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| 2 | K-box | 111.2 | 1.1e-36 | 75 | 174 | 3 | 100 |
K-box 3 kssgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88
++s++s +++ ++++qqe+akL+ +i+ Lq+ ++hl+Ge+L+sLs+keL+qLe++Le+++++iRskK+ell+++ie++qk+e elq
GSMUA_Achr7P23690_001 75 NTSNSSctIDTNSQQYYQQEAAKLRHQIQILQNANKHLMGESLSSLSVKELKQLENRLERGITRIRSKKHELLFAEIEYMQKREVELQ 162
55555566788899************************************************************************** PP
K-box 89 eenkaLrkklee 100
++n +Lr+k++e
GSMUA_Achr7P23690_001 163 NDNIYLRAKVAE 174
*********986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 1.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.641 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.31E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.77E-43 | 2 | 71 | No hit | No description |
| PRINTS | PR00404 | 3.6E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.6E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.6E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.4E-28 | 84 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 16.03 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 239 aa Download sequence Send to blast |
MGRGKIEIKR IENNTSRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFSS RGRLYEYSNN 60 SIKSTIERYK KAYANTSNSS CTIDTNSQQY YQQEAAKLRH QIQILQNANK HLMGESLSSL 120 SVKELKQLEN RLERGITRIR SKKHELLFAE IEYMQKREVE LQNDNIYLRA KVAENERAQQ 180 EVIVSTGAEF DALPTYDSRN YYHVNNMLEA ASHYSHHQDQ TALHLGYEMK DSSAAKNMI |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-20 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor. | |||||
| UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018684799.1 | 1e-176 | PREDICTED: MADS-box transcription factor 3-like isoform X3 | ||||
| Swissprot | F6I457 | 1e-111 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
| Swissprot | Q8RU31 | 1e-111 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
| TrEMBL | M0TK55 | 1e-175 | M0TK55_MUSAM; Uncharacterized protein | ||||
| STRING | GSMUA_Achr7P23690_001 | 1e-176 | (Musa acuminata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP649 | 37 | 144 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G18960.1 | 7e-94 | MIKC_MADS family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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