PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P23980_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 169aa MW: 19339.4 Da PI: 10.9709

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P23980_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.6	6.9e-30	88	146	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K++k+s++pr+YY C+s+gC+vkk+ver++ed ++v++tYeg Hnh+ GSMUA_Achr7P23980_001 88 LDDGYSWRKYGKKMMKNSQNPRNYYHCSSEGCNVKKRVERESEDSRFVITTYEGIHNHR 146 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.8E-32	74	148	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	81	148	IPR003657	WRKY domain
PROSITE profile	PS50811	29.826	83	148	IPR003657	WRKY domain
SMART	SM00774	8.5E-33	88	147	IPR003657	WRKY domain
Pfam	PF03106	3.4E-23	89	146	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSCCLLLSIR LRRQMTMMST KTSPSITSKY RGDLSFCSSV SRFILTVRVC VPLLVCRNGN 60 KAKGSVTGRS SSMRTRVAFR TKSEIEKLDD GYSWRKYGKK MMKNSQNPRN YYHCSSEGCN 120 VKKRVERESE DSRFVITTYE GIHNHRAPLP AIPTPHPTIG RPHPRSFSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-23	78	148	7	77	Probable WRKY transcription factor 4
2lex_A	1e-23	78	148	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018684481.1	2e-80	PREDICTED: probable WRKY transcription factor 43
TrEMBL	M0TK84	1e-121	M0TK84_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P23980_001	1e-122	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-34	WRKY DNA-binding protein 50