PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P24170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 502aa    MW: 55459.8 Da    PI: 9.9037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P24170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056789123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  GSMUA_Achr7P24170_001 67 FVCEICNKGFQRDQNLQLHRRGH 89
                           89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-66689No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176789IPR015880Zinc finger, C2H2-like
PfamPF121718.0E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035585108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.4E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.51E-6138163No hitNo description
SMARTSM00355180143163IPR015880Zinc finger, C2H2-like
PfamPF122652.1E-15390457IPR022052Histone-binding protein RBBP4, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MKVVEHKTPG LTSGTGEVTA VSSSQQSSFA SPNPLPAKKK RGPAGNPAPE AEVVALSPRS  60
LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWRLKQRTS KEARKKVYVC PEVSCVHHDP  120
SRALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDCKA HSKICGTREY KCDCGTLFSS  180
RRDSFITHRA FCDALAEENA RVTTANLVGD AHQLLLPQPA SSAHEHSPVF PYKNHQSPYL  240
SSHPTLTSSP HLSATALLQK AAQAGATMSR TKINTEMAAD TPTTAGIGLC LSSHRGMRYG  300
CGSSSHGLGP AVTFLQATAP GGSSEGIFNG MLAGSDRLKG SHGRDEEFAR ESLCNRWLVC  360
PKKSYEAGAR RRLARAGDEG ERGGKATVDE KYKQWKSLVP VLYDYWFANH NLAWPSLSCR  420
WGPQHEQATY KNRQRLYLSE QTDFSVPNTL VIANCEVVKP RVAAAEHISQ FNEEARSPFV  480
KKYKTIIHPG EVNRIRELPQ NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-31139204367Zinc finger protein JACKDAW
5b3h_F5e-31139204367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193105RLKQRTSKEARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410788.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLM0TKA30.0M0TKA3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P24170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-94indeterminate(ID)-domain 2