PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P24330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 666aa    MW: 74408.3 Da    PI: 5.2824
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P24330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.71.9e-22113213198
                            EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+k+lt sd++++g +++ +++a+e+      ++++ s++l+ ed+++ +W++k+i+r++++r++lt+GW+ Fv +++L +gD ++++
  GSMUA_Achr7P24330_001 113 FCKILTASDTSTHGGFSVLRRHATEClppldVSQQTPSQELVAEDLHSLEWRFKHIFRGQPRRHLLTTGWSTFVASKRLVAGDAFILM 200
                            99*****************************445556779************************************************ PP

                            E-SSSEE..EEEEE- CS
                     B3  84 ldgrsefelvvkvfr 98 
                              + ++ el+v+v+r
  GSMUA_Achr7P24330_001 201 --RGENDELRVGVRR 213
                            ..3488889***998 PP
2Auxin_resp98.97.3e-33239318183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha+st++ F v+Y+Pr    +F+v+++k+++a+k++++vGmRfkm+fe+ed++e++++Gtv+g+ d+++ +Wp+SkWrsLk
  GSMUA_Achr7P24330_001 239 ASHAISTHTLFMVYYKPRC--NQFIVSLNKYLEATKNEFAVGMRFKMKFEGEDVPEKSFTGTVIGIGDISS-QWPGSKWRSLK 318
                            789***************7..89*********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-41102242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-38106228IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-17111213No hitNo description
PfamPF023624.2E-20113213IPR003340B3 DNA binding domain
PROSITE profilePS5086310.687113215IPR003340B3 DNA binding domain
SMARTSM010191.7E-20113215IPR003340B3 DNA binding domain
PfamPF065078.6E-31239318IPR010525Auxin response factor
PfamPF023098.7E-7549603IPR033389AUX/IAA domain
PROSITE profilePS5174525.21567648IPR000270PB1 domain
SuperFamilySSF542771.47E-10569643No hitNo description
PfamPF023091.6E-5614650IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MLKKGDTLYE ELWRACAGPL VEIPRVDERV FYFPQGHLEQ LEVSTDQELN QQIPLFNLPP  60
KILCRVVNVT LKAEPDTDEV YAQITLIPES DQNEPTSPDP CVLETPRPVV HSFCKILTAS  120
DTSTHGGFSV LRRHATECLP PLDVSQQTPS QELVAEDLHS LEWRFKHIFR GQPRRHLLTT  180
GWSTFVASKR LVAGDAFILM RGENDELRVG VRRLARCQNT LPTSVISSHS MHVGLLATAS  240
HAISTHTLFM VYYKPRCNQF IVSLNKYLEA TKNEFAVGMR FKMKFEGEDV PEKSFTGTVI  300
GIGDISSQWP GSKWRSLKVH WDEASSIQKP EKISPWDVEP FGQPISASGD PQAAFSKKRA  360
RSPLDLPGTE PSSTFRHPVE DQMFDLRPPN SISARSSETR FLWSPRQTES INFNYLNIPR  420
PCNRGLLDGW SKDSSSLPHV TPKRLEDAVG DAEATLPSWG LALTPITEEP SLDLECKIEN  480
EKKPKSSGCY RLFGIDLVSP SAGISSTVLS GDHACISSAT TEDPVAATAL NEDLDEQSGV  540
SKASKETKQV LQASPKEIQS KQNIAARSCT KVHMQGIAVG RAVDLANLEG YDELFIELEQ  600
MFEIKGELRC RDKWEVVFTD DEGDMMLVGD YPWPEFCEVA RKILIYPSED VKRVEPENKL  660
PATSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-170634217356Auxin response factor 1
4ldw_A1e-170634217356Auxin response factor 1
4ldw_B1e-170634217356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410807.10.0PREDICTED: auxin response factor 18
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLM0TKB90.0M0TKB9_MUSAM; Auxin response factor
STRINGGSMUA_Achr7P24330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]