PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P24410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LSD

Protein Properties

Length: 91aa MW: 9775.4 Da PI: 8.4191

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P24410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44.6	2.3e-14	3	27	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCr lLsYPr+A++V+Ca+C+tV GSMUA_Achr7P24410_001 3 CGGCRQLLSYPRNASYVQCASCQTV 27 ************************9 PP
2	zf-LSD1	38.4	2e-12	41	63	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 Cg C +lL+YP+GApsVRC++C GSMUA_Achr7P24410_001 41 CGRCSVLLMYPYGAPSVRCSSCC 63 **********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.5E-15	1	30	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.4E-12	3	27	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	5.3E-8	39	66	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-11	41	65	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MVCGGCRQLL SYPRNASYVQ CASCQTVNLV LEAHQVGNVK CGRCSVLLMY PYGAPSVRCS 60 SCCFITKIGE HNVRPPLSVQ QGQPPTGNPV C

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410823.1	5e-62	PREDICTED: regulator of G-protein signaling 3
Swissprot	O65426	2e-34	LOL2_ARATH; Protein LOL2
TrEMBL	M0TKC7	8e-59	M0TKC7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P24410_001	1e-59	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13395	25	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	9e-37	lsd one like 2