PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P24780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 180aa    MW: 20347 Da    PI: 9.6438
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P24780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1062e-3397155159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+v+r +ed+++v++tYeg Hnh+
  GSMUA_Achr7P24780_001  97 LDDGYRWRKYGQKAVKNSMFPRSYYRCTHHTCNVKKQVQRMSEDTSIVVTTYEGVHNHP 155
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3383155IPR003657WRKY domain
SuperFamilySSF1182903.53E-2990156IPR003657WRKY domain
PROSITE profilePS5081128.7792157IPR003657WRKY domain
SMARTSM007741.7E-3997156IPR003657WRKY domain
PfamPF031068.3E-2798155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEPSPHFPCL SHQTASASAA RYCPSDPYSP PEQQGQHLSF ASGEPSGVDW ASLLLPRPTQ  60
EGEGETRREK GRSSGRTRKV VSRPRFAFRT RSANDVLDDG YRWRKYGQKA VKNSMFPRSY  120
YRCTHHTCNV KKQVQRMSED TSIVVTTYEG VHNHPCEKLM EALSPLLKQV HLLAPVMGML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-2485154271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410870.11e-134PREDICTED: probable WRKY transcription factor 43
SwissprotQ8VWQ44e-50WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLM0TKG41e-133M0TKG4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P24780_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.14e-52WRKY DNA-binding protein 43