PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P24790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 209aa    MW: 23897.4 Da    PI: 10.1838
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P24790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.8e-34181102103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            F+ k+ye+++d++++ li+w + +nsfvv+++++f++ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g
  GSMUA_Achr7P24790_001  18 FVAKTYEMVNDPRTDCLIRWGKGNNSFVVVNPSDFSQFLLPSYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHHLFLRG 96 
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            + +ll ++ r++++
  GSMUA_Achr7P24790_001  97 QIHLLPHVIRRSKK 110
                            *******9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3712101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-5014107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.39E-3315107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEEIRNTSVG YQVQASPFVA KTYEMVNDPR TDCLIRWGKG NNSFVVVNPS DFSQFLLPSY  60
FKHSNFSSFV RQLNTYGFRK VDPDRWEFAH HLFLRGQIHL LPHVIRRSKK SHVGLCAGSS  120
SSSITRRVRV QKQQRQPPSP SLYSATDSAS LYELKVYCQT SSCFCILGRY CSFLIANLLS  180
SPLSSKIVYF IDINFKNLQT AKSLSMTRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-221810720120Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3324654e-32AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds.
GenBankAY3444864e-32AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds.
GenBankAY9981184e-32AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009410872.13e-89PREDICTED: heat stress transcription factor C-1b-like
TrEMBLM0TKG51e-154M0TKG5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P24790_0011e-154(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-46heat shock transcription factor C1