PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P24840_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 248aa MW: 26735.4 Da PI: 5.4148

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P24840_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93	2.2e-29	82	140	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ +Hnh+ GSMUA_Achr7P24840_001 82 ADSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPDAIVVTYSFDHNHP 140 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-30	75	142	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-25	79	142	IPR003657	WRKY domain
SMART	SM00774	3.4E-34	81	141	IPR003657	WRKY domain
PROSITE profile	PS50811	31.835	83	142	IPR003657	WRKY domain
Pfam	PF03106	3.2E-25	83	140	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MNGSCSDELE RCEPEEAGIA SDANDRSLRS GGSGDDAKPV RSLAPSSSSA PSPKRSRRAV 60 EKRVVTVPIS DAKGTGEGAP PADSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE 120 RSRVDPDAIV VTYSFDHNHP WPLPKNHHHK HAAAAMQQTV EDQPPPQNQS SPPESAERDE 180 KFSDLIAEEE PALLVDAPGG GFQWFADEAG GRVVEEEDSL FAGLGELPEY SVVLRRGLAS 240 ASWVGTTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-19	62	142	6	79	Disease resistance protein RRS1
5w3x_D	1e-19	62	142	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ323512	5e-35	DQ323512.1 Triticum aestivum WRKY28 mRNA, partial cds.
GenBank	EU669659	5e-35	EU669659.1 Triticum aestivum WRKY28 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009410878.1	1e-146	PREDICTED: probable WRKY transcription factor 65
Swissprot	Q93WV5	1e-52	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	M0TKH0	1e-180	M0TKH0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P24840_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7088	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	1e-49	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]