PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P25070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 257aa    MW: 27891.1 Da    PI: 6.5
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P25070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07130152426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            +lC++f+r+G C++G++C  aHg
  GSMUA_Achr7P25070_001 130 SLCPDFRRGGGCRRGESCDLAHG 152
                            79****************88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.35283115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5125156IPR000571Zinc finger, CCCH-type
SMARTSM003560.011126153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.929127154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-6130154IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5130152IPR000571Zinc finger, CCCH-type
SMARTSM003567162185IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.709162186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVPGQGTYAG PTAYVAPWSY SDNSMAAIQH YPVLPVSGVA GLSADLPPHL LGEVGFAAFQ  60
RFLPRNDGSS SSAADPTAAD AYACDEFRMY EFKVRRCPRG RSHDWTECPY AHPGEKARRR  120
DPRRFHYSGS LCPDFRRGGG CRRGESCDLA HGVFETWLHP ARYRTQPCKD GAACRRRVCF  180
FAHSPEQLRL VLPPSPISPS EGGARVSSSP TSTLALAPMS PPSDGSSPPV SPVAQEEEEE  240
AAEAVPDLGW VTELVND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411222.11e-172PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLM0TKJ30.0M0TKJ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P25070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-58C3H family protein