PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P25840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 247aa    MW: 27089.3 Da    PI: 7.2207
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P25840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.84.5e-28121179159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+ rKYGqK vkg ++prsYY+ t agCpv+k++er+++dpk+v++tY g+Hnh+
  GSMUA_Achr7P25840_001 121 LDDGYRRRKYGQKIVKGDPNPRSYYKRTNAGCPVRKHIERASHDPKAVITTYDGKHNHD 179
                            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31106181IPR003657WRKY domain
SuperFamilySSF1182903.53E-23113181IPR003657WRKY domain
PROSITE profilePS5081134.268116181IPR003657WRKY domain
SMARTSM007744.0E-28121180IPR003657WRKY domain
PfamPF031069.6E-21122179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MERSDGLVTG IIYKGHHDHP KPQSSCRLAA GTMLSCHEEE KTDKLSSLMS VEDESTNAPD  60
HTYHQIDPNS ITEGNCIKYL LDLAIPLIRK MEIANNNSAL IGKTDQEPRV VVQTLSQVDI  120
LDDGYRRRKY GQKIVKGDPN PRSYYKRTNA GCPVRKHIER ASHDPKAVIT TYDGKHNHDV  180
PAAKTISHEA SASVSNPISL DLGVGISTSQ SDATNGSQQL LGTDQIHQHH QAQFVGSGKL  240
VIQATPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-34112182878Probable WRKY transcription factor 4
2lex_A1e-34112182878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394385.11e-101PREDICTED: WRKY transcription factor SUSIBA2
RefseqXP_018685023.11e-105PREDICTED: WRKY transcription factor SUSIBA2-like
SwissprotQ6VWJ65e-69WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLM0TKS00.0M0TKS0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P25840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.13e-58WRKY family protein