PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P26260_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 212aa MW: 22322.3 Da PI: 4.9707

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P26260_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.3	3.7e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++C+l+p++ p++q++++ +v+k+FG++ ++++++ +p+++r+++++sl++eA+ r+ +Pv+Gavg+++++ GSMUA_Achr7P26260_001 2 SCNGCRVLRKGCSDSCFLRPCLqwidfPEAQAHATVFVAKFFGRAGLMSFISGVPPSQRPALFKSLLFEACGRTINPVNGAVGLMWTG 89 6******************999999********************************************************* PP DUF260 84 qqqleqlkaelall 97 +++l+q+++e++l+ GSMUA_Achr7P26260_001 90 NWHLCQAAVETVLR 103 ******999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.155	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.1E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MSCNGCRVLR KGCSDSCFLR PCLQWIDFPE AQAHATVFVA KFFGRAGLMS FISGVPPSQR 60 PALFKSLLFE ACGRTINPVN GAVGLMWTGN WHLCQAAVET VLRGGTLSTL PGLAAEDHSD 120 DAPPESDGLC SPPLMGFSSS AAERWKVPAP YDAAAALSCD LDLCLTPSPG DGSEEKRSWR 180 PATPSINSEG SVTTSGGGDG STAEPRLLNL FV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411060.1	1e-153	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9FN11	8e-65	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	M0TKW2	1e-152	M0TKW2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P26260_001	1e-153	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-66	LOB domain-containing protein 39

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]