PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P26700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27251.8 Da    PI: 7.4062
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P26700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.39.5e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk nrqv+f+kRrng+lKKA+ELS LCd+eva++ifss+g+l+e++s
  GSMUA_Achr7P26700_001  9 KRIENKVNRQVSFAKRRNGLLKKAYELSLLCDVEVALVIFSSRGRLFEFCS 59
                           79***********************************************96 PP
2K-box96.34.7e-32791736100
                  K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                               l++++ + ++qe+ kLk+++e Lq++q +llGedL++Ls+ +LqqLe+q+e slk+iRs+K++++++q+ +l +ke++lqe+n++
  GSMUA_Achr7P26700_001  79 EHTLSSNEPQMSYQEYLKLKERVEYLQHSQNNLLGEDLGPLSIHDLQQLENQIEMSLKQIRSTKMQVMFDQLCDLNHKEQALQEANTN 166
                            44489999******************************************************************************** PP

                  K-box  94 Lrkklee 100
                            Lr++l+e
  GSMUA_Achr7P26700_001 167 LRRQLQE 173
                            ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.945161IPR002100Transcription factor, MADS-box
CDDcd002659.13E-41273No hitNo description
SuperFamilySSF554556.28E-31276IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.4E-2883171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.45587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKVELKR IENKVNRQVS FAKRRNGLLK KAYELSLLCD VEVALVIFSS RGRLFEFCSS  60
SSVLKTIERY RSCRYNVSEH TLSSNEPQMS YQEYLKLKER VEYLQHSQNN LLGEDLGPLS  120
IHDLQQLENQ IEMSLKQIRS TKMQVMFDQL CDLNHKEQAL QEANTNLRRQ LQEAGSPNLL  180
QLSWPNGDSS AANEPPQAAG FYKSQGEEPP LQTGFNLSCT APWNNEATEG YGFISRWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-239017420104Developmental protein SEPALLATA 3
4ox0_B1e-239017420104Developmental protein SEPALLATA 3
4ox0_C1e-239017420104Developmental protein SEPALLATA 3
4ox0_D1e-239017420104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8153730.0KC815373.1 Musa acuminata isolate LOF19 sepallata-like MADS box transcription factor LOFSEP (LOFSEP-2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684258.11e-177PREDICTED: MADS-box transcription factor 5-like isoform X3
SwissprotQ8LLR21e-88MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLM0TL061e-176M0TL06_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P26700_0011e-177(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.15e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]