PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P26850_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 269aa    MW: 30114.5 Da    PI: 6.5057
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P26850_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-056183123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ Cg+ F++   L  H+++H
  GSMUA_Achr7P26850_001 61 YSCSFCGREFRSAQALGGHMNVH 83
                           99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.81E-75888No hitNo description
Gene3DG3DSA:3.30.160.602.1E-45985IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.2176188IPR007087Zinc finger, C2H2
PfamPF139123.5E-66184IPR007087Zinc finger, C2H2
SMARTSM003550.0026183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEQARYWMIT SRNLNEMPFL SSQIPPLGVS SSYDAESWEE QAFARDSAGD LGSCVWPPRS  60
YSCSFCGREF RSAQALGGHM NVHRRDRAML KHSPSLDSCT PTGAACPPPI ASLDQRALVN  120
PNPNLSSIST RVPAAASRLE WKERDSISPL YSSSVVGENR KRSLFSTATT STESATLQLF  180
SLPELNLHKR NSQRWKDEDD SDDYNSCCKR VRRTDSVHPF RVRPSSSGET QPLHPEVLKH  240
DHGPVEELDL ELRLGDSPQV KPLCLDEDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-125683229superman protein
2l1o_A3e-125683229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411145.20.0PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLM0TL210.0M0TL21_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P26850_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-24C2H2 family protein