PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P27030_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 326aa MW: 35326.5 Da PI: 9.3798

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P27030_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.6e-39	78	138	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++lkcprCds+ntkfCyynnysl+qPr++Ck+CrryWtkGGalrnvPvGgg+rknk+s+ GSMUA_Achr7P27030_001 78 PEQSLKCPRCDSSNTKFCYYNNYSLAQPRHYCKTCRRYWTKGGALRNVPVGGGCRKNKRSK 138 68999*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-24	70	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.7E-33	80	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.339	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MSRAPSLASA AGKLTQLIQH LLPTSIPPLY STLPTRYLRP SHLPFPLRKK GRRATMDDES 60 HASGGCKSTA TASELRHPEQ SLKCPRCDSS NTKFCYYNNY SLAQPRHYCK TCRRYWTKGG 120 ALRNVPVGGG CRKNKRSKSS TSRLMSSSSG TAATPMLGYN YPVSAVGVYS DTGGCSSSAG 180 SGHTNSSIAS SIESLSSINQ DLHWKLQQQR LAMFYGGQAH KDSSSTSAFP PPFLENQQDP 240 ISFEAVERSK DEGLEGHAST KCCAGSGHHT SPPWFVESSP TMPITTITTD TTMSTMTTNN 300 GNSNTGIWNG TPWPVWNDMP QFGTLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582402	1e-51	KC582402.1 Sorghum bicolor dof5 protein (dof5) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411343.1	1e-103	PREDICTED: dof zinc finger protein DOF5.7-like
Swissprot	Q9LSL6	5e-42	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	M0TL39	0.0	M0TL39_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P27030_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38000.1	3e-32	DNA binding with one finger 4.7

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]