PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P00680_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

CAMTA

Protein Properties

Length: 139aa MW: 16604.3 Da PI: 10.8244

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P00680_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	150.9	3e-47	37	138	3	103
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 +e ++rwlk+ e++ iL+++e++++t++++++p+sgsl+L+nr+++ryfr+DGysw+kkk+gkt rE he+LKvg+ e+++cyYa++e GSMUA_Achr8P00680_001 37 EEaQSRWLKPVEVLYILQKHESFKITQKPPQKPPSGSLFLFNRRVLRYFRNDGYSWQKKKNGKTAREGHERLKVGNSEAINCYYARGE 124 56699********************************************************************************* PP CG-1 90 enptfqrrcywlLe 103 +n+ +qrr+yw+L+ GSMUA_Achr8P00680_001 125 KNSCIQRRSYWMLD 138 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	65.355	32	139	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.5E-48	35	139	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.3E-42	38	138	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MLMRWTVNWG RILRLLKCIT FVFSRVVTGF DINKLSEEAQ SRWLKPVEVL YILQKHESFK 60 ITQKPPQKPP SGSLFLFNRR VLRYFRNDGY SWQKKKNGKT AREGHERLKV GNSEAINCYY 120 ARGEKNSCIQ RRSYWMLDP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412759.1	7e-73	PREDICTED: calmodulin-binding transcription activator 4 isoform X2
Refseq	XP_009412760.1	4e-73	PREDICTED: calmodulin-binding transcription activator 4 isoform X3
Refseq	XP_009412761.1	4e-73	PREDICTED: calmodulin-binding transcription activator 4 isoform X4
Swissprot	Q9FYG2	2e-43	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	M0TLH0	2e-99	M0TLH0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P00680_001	1e-100	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15485	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	8e-46	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]