PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 457aa    MW: 51065.2 Da    PI: 6.2402
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.56.3e-9417745691374
                   GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelg 173
                             +f+h++aN  Ilea+ege+ vH++D++++qGl    QW  Ll++La R ++pp +lRiTgvg     + e l+++g+ L+++A++lg
  GSMUA_Achr8P01180_001 177 QRFGHFVANASILEALEGESSVHVVDLGMTQGLphghQWRQLLDSLAGRGSPPPrRLRITGVGT----RVEHLQSIGDELKSYAASLG 260
                            68**************************998644444*************999989********....9******************* PP

                   GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                            +++ef v ++++le+l+++++++++gE+++Vn++lqlh +++es    +   +vL+++ +lsP v+v+veq+++hn++ Fl rf+eal
  GSMUA_Achr8P01180_001 261 IHLEFLV-LESNLENLRTDDFEIEQGEVVVVNSILQLHCVVKESRGALN---SVLQVIHELSPAVLVLVEQDSSHNGPFFLGRFMEAL 344
                            ******9.699******************************88877777...8*********************************** PP

                   GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                            +yysa+fdsl+a lp+ +  r+kvE++ +++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+p++  +++qak  l+k+k  +g
  GSMUA_Achr8P01180_001 345 HYYSAIFDSLDAMLPKYDTRRAKVEQFHFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFHPAPIK--MMAQAKQWLAKFKpTEG 430
                            *******************************************************************96..789************** PP

                   GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                            y++ ee+g+lvlgWk++p++++S W+
  GSMUA_Achr8P01180_001 431 YTIAEEKGCLVLGWKSKPIIAASGWK 456
                            *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.22676437IPR005202Transcription factor GRAS
PfamPF035142.2E-91177456IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSPACYLKPQ EEQLQQLNYN EEGMGDNGAE LGLSNMAKMD LHPVCFNLLP WDHASSAWFS  60
PPLELNRQRK KQRTTNSVAA ITVVGGDDVD DDRSDYARKL RFRDLLRTYK QRISALEVVE  120
ESPESDGIFE DGSGDGMRLV QLLISCAEAV ACRDRAQASA LLCELKASAL VLGTSFQRFG  180
HFVANASILE ALEGESSVHV VDLGMTQGLP HGHQWRQLLD SLAGRGSPPP RRLRITGVGT  240
RVEHLQSIGD ELKSYAASLG IHLEFLVLES NLENLRTDDF EIEQGEVVVV NSILQLHCVV  300
KESRGALNSV LQVIHELSPA VLVLVEQDSS HNGPFFLGRF MEALHYYSAI FDSLDAMLPK  360
YDTRRAKVEQ FHFAEEIKNI VSCEGPARVE RHERVDQWRR RMSRAGFHPA PIKMMAQAKQ  420
WLAKFKPTEG YTIAEEKGCL VLGWKSKPII AASGWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-54178455110378Protein SCARECROW
5b3h_A6e-54178455109377Protein SCARECROW
5b3h_D6e-54178455109377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16672RQRKKQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412995.10.0PREDICTED: DELLA protein RGA2-like
TrEMBLM0TLM00.0M0TLM0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-67GRAS family protein