PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 323aa    MW: 34977.6 Da    PI: 6.9974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13256301655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri +++++L  l+P+     +k  s +++Le+A++YIk+Lq
  GSMUA_Achr8P01370_001 256 SIAERERRTRISKRLQKLHNLVPNM----DKQTSTSDMLELAIQYIKELQ 301
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.297250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-16253312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.68E-13254305No hitNo description
Gene3DG3DSA:4.10.280.104.2E-16255313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10256301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-12256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNRSPTDGNE LEASGLGLSR YGSDPGSLLA GVASEGGGIS RFAPAGEDSS SSCRGSDRGP  60
RGPYEPDEVH AAVDLAAKVG GGPALVRHSS SPAGFFSRLL MDHGLSSPSG IGSYSRTGNG  120
GAHTVASRRL RSQWSFSRKD TLSHISEMSI PEIGEDVDCD SSSDEATAHV EQSFISGNFQ  180
LSSWDDSNSI MFSAPHKRTK GNNGDILTSL SNTDSQFNLS KNSLEVSSIE KYLQLQQDSV  240
PCRVRAKRGC ATHPRSIAER ERRTRISKRL QKLHNLVPNM DKQTSTSDML ELAIQYIKEL  300
QSQVQKLKQE QEDCICTSRQ EKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412679.10.0PREDICTED: transcription factor bHLH128
TrEMBLM0TLN90.0M0TLN9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.17e-54bHLH family protein