PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P01410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 240aa MW: 27395.6 Da PI: 9.3788

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P01410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.1	1.1e-42	5	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 ppG+rF Pt+eel+ +yL++k+e++ ++ e ++ +++++++Pw+Lp ++ +e++w+fF++r++++a+g r++r+t+sgyWk GSMUA_Achr8P01410_001 5 PPGYRFYPTEEELIGFYLRNKLEHRGEDVMEQvVPVAHVHRFDPWQLPpIsgePCRRDEEQWFFFCPRQEREAHGGRPTRITASGYWK 92 9*********************9977655538888******9535654455888************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+ + v+s+ ++++g k+t+vfy+grap+g+kt+W m+eyr+ GSMUA_Achr8P01410_001 93 ATGSPTLVYSSMNRVMGKKRTMVFYRGRAPNGTKTQWKMNEYRA 136 ****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-46	3	170	IPR003441	NAC domain
PROSITE profile	PS51005	47.324	4	170	IPR003441	NAC domain
Pfam	PF02365	1.1E-23	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSSFPPGYRF YPTEEELIGF YLRNKLEHRG EDVMEQVVPV AHVHRFDPWQ LPPISGEPCR 60 RDEEQWFFFC PRQEREAHGG RPTRITASGY WKATGSPTLV YSSMNRVMGK KRTMVFYRGR 120 APNGTKTQWK MNEYRALEES AASTIHSSAA QKVIITSIMV EFTLCRIHTK SGSSRSFDRR 180 PSEAVAAANT DAQKPVSAKR SLSHDSTSSD GNGSQRALRR RGEDDARLDN DNSELLQDWF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-37	3	175	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-37	3	175	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-37	3	175	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-37	3	175	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-37	3	175	19	173	NAC domain-containing protein 19
3swm_B	3e-37	3	175	19	173	NAC domain-containing protein 19
3swm_C	3e-37	3	175	19	173	NAC domain-containing protein 19
3swm_D	3e-37	3	175	19	173	NAC domain-containing protein 19
3swp_A	3e-37	3	175	19	173	NAC domain-containing protein 19
3swp_B	3e-37	3	175	19	173	NAC domain-containing protein 19
3swp_C	3e-37	3	175	19	173	NAC domain-containing protein 19
3swp_D	3e-37	3	175	19	173	NAC domain-containing protein 19
4dul_A	3e-37	3	175	16	170	NAC domain-containing protein 19
4dul_B	3e-37	3	175	16	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412675.1	1e-173	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	5e-69	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M0TLP3	0.0	M0TLP3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P01410_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-71	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]