PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 238aa    MW: 25458.7 Da    PI: 4.6128
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011213234323
                            ETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                            C+ Cgk F++   L+ H +  H
  GSMUA_Achr8P01440_001 213 CKSCGKKFNSDNGLQAHTKAkH 234
                            *****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.009211238IPR007087Zinc finger, C2H2
PROSITE patternPS000280213234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLICLALCKH ILAAIDFLDL DFDCWPTFPD FDESDSDADE DIQLEHIVNG KTNVKDEQPK  60
STAGKPNVAS AKVKPKVAEL KKADKQKANK EDDEDDEESE EDESDDDEDT AKADAEDDSE  120
DEDESSDEDE ATVKKAEPSN KRPAGSALKT PVSEKKAKLR VSQGSGGSQK KGGAGKNDGQ  180
PATPNPAKRS GKTPATNDKS KQQTPKSAGS INCKSCGKKF NSDNGLQAHT KAKHGGAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412671.11e-142PREDICTED: histone deacetylase HDT1-like isoform X1
TrEMBLM0TLP61e-168M0TLP6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01440_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.16e-13histone deacetylase 2C