PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P01590_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 420aa MW: 45738.8 Da PI: 6.0329

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P01590_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.4	6.7e-15	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p + e ++ k l ++ +++V++WFqNrR + ++ GSMUA_Achr8P01590_001 28 RTRWTPKPEQILILESIFNSgMVNPPKGETVRIRKLLeqfgSVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	104.7	6.2e-34	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +rtRWtP+peQi iLe++++sG+++P+k e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q GSMUA_Achr8P01590_001 27 VRTRWTPKPEQILILESIFNSGMVNPPKGETVRIRKLLEQFGSVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-13	21	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.062	24	89	IPR001356	Homeobox domain
SMART	SM00389	9.7E-6	26	93	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.9E-8	28	93	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-12	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MDDHNQCHNN SPNLRRSVPD GTVTEPVRTR WTPKPEQILI LESIFNSGMV NPPKGETVRI 60 RKLLEQFGSV GDANVFYWFQ NRRSRSRRRQ RQLQASLMAG QQVSSGVPRA STPPTSSNTS 120 SSNSAGGEAG LFSCSSFASP SSSNFMIDDS ADDLFSICRQ MGFMESTQDI SQLHYQPALN 180 LWSNTRDSCS TGNVLDRLKF FVILTIFQLI WTMKCVTAGT VIVFINGVLN EVPSGPIDLR 240 AMFGHNVMLV HSSGEVLPVN EHGILMQSLQ MGESYFLVSN SISSGVPRAS TPPTSSSTSS 300 SNSAGGEAGL FSCSSFASSS SSNFMIDDSA DDLFSICRQM GFMESTQDVS AWLSVVILTI 360 FQLIWTMKCI TAGTVIVFIN GVLNEVPSGP IDLRAMFGHN VMLVHSSGEV LPVNEHGILM

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MDDHNQCHNN SPNLRRSVPD GTVTEPVRTR WTPKPEQILI LESIFNSGMV NPPKGETVRI  60
RKLLEQFGSV GDANVFYWFQ NRRSRSRRRQ RQLQASLMAG QQVSSGVPRA STPPTSSNTS  120
SSNSAGGEAG LFSCSSFASP SSSNFMIDDS ADDLFSICRQ MGFMESTQDI SQLHYQPALN  180
LWSNTRDSCS TGNVLDRLKF FVILTIFQLI WTMKCVTAGT VIVFINGVLN EVPSGPIDLR  240
AMFGHNVMLV HSSGEVLPVN EHGILMQSLQ MGESYFLVSN SISSGVPRAS TPPTSSSTSS  300
SNSAGGEAGL FSCSSFASSS SSNFMIDDSA DDLFSICRQM GFMESTQDVS AWLSVVILTI  360
FQLIWTMKCI TAGTVIVFIN GVLNEVPSGP IDLRAMFGHN VMLVHSSGEV LPVNEHGILM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269\|PubMed:26307379, ECO:0000269\|PubMed:29740464}.
UniProt	Transcription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250\|UniProtKB:Q0D3I7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412657.1	1e-131	PREDICTED: WUSCHEL-related homeobox 11-like
Swissprot	B8B644	2e-57	WOX11_ORYSI; WUSCHEL-related homeobox 11
Swissprot	Q0D3I7	2e-57	WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBL	M0TLR1	0.0	M0TLR1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P01590_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	4e-33	WUSCHEL related homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhao Y, et al. The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling. Plant Cell, 2015. 27(9): p. 2469-83 [PMID:26307379] Zhang T, et al. The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice. Front Plant Sci, 2018. 9: p. 523 [PMID:29740464]