PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 279aa    MW: 29914.9 Da    PI: 9.1534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.65e-2173122255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +grW+AeIr ps    r kr++lg+f+taeeAa+a++aa+ +l+g
  GSMUA_Achr8P01690_001  73 RFRGVRRRP-WGRWAAEIRAPS----RrKRVWLGTFDTAEEAAAAYDAAAIRLRG 122
                            79*******.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-1772131No hitNo description
SuperFamilySSF541711.37E-2073130IPR016177DNA-binding domain
SMARTSM003801.6E-3173136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2873130IPR001471AP2/ERF domain
PROSITE profilePS5103223.84173130IPR001471AP2/ERF domain
PfamPF008475.9E-1573122IPR001471AP2/ERF domain
PRINTSPR003674.6E-117485IPR001471AP2/ERF domain
PRINTSPR003674.6E-1196112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKTVPVAIGR GRKVVRIHCT DADATGSSGD ENEAAMRRVK RHVQEIGFEV AAAKAQVDRR  60
PLAAVSGSCC GKRFRGVRRR PWGRWAAEIR APSRRKRVWL GTFDTAEEAA AAYDAAAIRL  120
RGDNAETIFP AGTAAAAGNR DLSSVGDAAA SDNPFSSPSS VLCNGMDKTP FDVLGHGDVD  180
AFGLSVDPPL HTRELYPPKW PCGDTGDEFA EFAAEDFLLP AAPSSLSNAD TALALSQSKR  240
EHMARVNGKS CYVRVSRVLS PKVVLRTCKP PYCGMRGTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1871130363ATERF1
3gcc_A9e-1871130363ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17796RRRPWGRWAAEIRAPSRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412988.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046824e-41PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLM0TLS10.0M0TLS1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-14cytokinin response factor 4