PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 857aa    MW: 94708.7 Da    PI: 6.8161
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18329428198
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d++g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++
  GSMUA_Achr8P01750_001 329 FEKVLSASDAGRIGRLVLPKACAEAYfpRISQPEGVPLTIQDTKGKDWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSR 415
                            99**************************777789999***************9989999999***9.********************9 PP

                            -SSSEE..EEEEE- CS
                     B3  85 dgrsefelvvkvfr 98 
                            ++  e++lv++ ++
  GSMUA_Achr8P01750_001 416 ID-PEGKLVMGYRK 428
                            87.77777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-29321431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-19326428IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-22327428No hitNo description
SMARTSM010192.2E-19329429IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251329430IPR003340B3 DNA binding domain
PfamPF023621.1E-15329428IPR003340B3 DNA binding domain
PROSITE profilePS5105014.937562612IPR011124Zinc finger, CW-type
PfamPF074966.5E-13567609IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MATVRCMNVA CGLTDPGGEW RRGWELRSGG FATLCVKCGM AYEQSAFCDI FHQKESGWRE  60
CCSCGKRLHC GCIASKSFFH LLDTGGVQCT GCMKNLEVPS VRSYLSEVIQ SFLSQHHQRV  120
NAPSPKSSKE NDADTAVTGR TCEMSATTSD SKIDVSKFVK GKGMQNADLE QSESEIRSYP  180
GPVGSSQISL RDEKDFMTDK SICESLAQSC LSMSLVHSNQ GSNTETCNTA GKPFLALHMA  240
CSIAEGKDER NTISALQQMQ RPQCILAKPL KTCTRSFSEA SKNGLPYMRV ARPPTEGRNQ  300
LLPRYWPRIT DQELQQISGD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPRISQ  360
PEGVPLTIQD TKGKDWHFQF RFWPNNNSRM YVLEGVTPCI QSLQLQAGDT VTFSRIDPEG  420
KLVMGYRKAT NTVPLQQDSQ ISAIANGTFG NETLFTGISE SVPAVSGYSG LLHWHKGGTS  480
NEGMQLQALQ KRTRNIGAKS RRLLMNTDDA LELKLTWEDA QELLRPPPSA KPSIVTIEDY  540
EVEEYDEPPI FGKKTIFTAR PSGEQDQWVQ CDDCYKWRRL PVDVLLLSKW SCADNTWDPK  600
RSSCSAPDEL SQQEMQLLLR QYEDLIRQRT SACFKQDSSE IAASSLDALA AAAALGDVGN  660
QTTTPYATTT KHPRHRPGCT CIVCIQPPSG KGPKHDPTCT CNVCMTVKRR FKTLMMRKRK  720
RQSEREESEV HKKENEFSPV SSRTIMENVE VSQGQIDLNC HPMSHDSQAL NPRNSMMSLL  780
QDAYRPLETY LKQNGLTSLA SQQSKQGSPS SLTVPQAPGE SEGKVPDESH FASASKEQEG  840
GDDEGDVGTD MATSDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-663074362131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1707720KRRFKTLMMRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412644.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like
RefseqXP_018685939.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLM0TLS70.0M0TLS7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01750_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]