PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P01930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 226aa    MW: 24523.3 Da    PI: 8.0935
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P01930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-164587347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           ++T+ Ed  ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ 
  GSMUA_Achr8P01930_001 45 PFTPAEDATILAAHDRYGNK-WATIARLLP-GRTDNAIKNHWNST 87
                           89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-61136IPR009057Homeodomain-like
SuperFamilySSF466895.62E-171384IPR009057Homeodomain-like
SMARTSM007172.0E-141490IPR001005SANT/Myb domain
PROSITE profilePS5129423.5033892IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-203991IPR009057Homeodomain-like
PfamPF002499.1E-144587IPR001005SANT/Myb domain
CDDcd001671.03E-114588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVMVEESDKG EQRVKGSWSP EEDAALTRLV ERHGARNCPS VHHRPFTPAE DATILAAHDR  60
YGNKWATIAR LLPGRTDNAI KNHWNSTLRR RRRRATPVAP SPSSSPLPLS SSSPIATEPD  120
YSDSGSARKR QRSSEDANGG GCSSLAADPT TSLSLSLPGD GGGAERRSDG PLGDVERLRD  180
MCLVSIMRQM IAEEVRSYID KLRSPGAVDD TVSVVVKAEP PSDRQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2114913104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-20149157158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-20149157158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-2114913104C-Myb DNA-Binding Domain
1msf_C5e-2114913104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412621.11e-138PREDICTED: transcription factor MYB44-like
SwissprotO231601e-29MYB73_ARATH; Transcription factor MYB73
TrEMBLM0TLU51e-162M0TLU5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P01930_0011e-163(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-27myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]