PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P02040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 128aa    MW: 15020.1 Da    PI: 10.1164
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P02040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.3e-21666257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                           ++R+++t+eql +Lee++++  r+psa+++++ +++l    +++ ++V++WFqN++a+e++
  GSMUA_Achr8P02040_001  6 SSRWCPTPEQLMILEEMYRSgVRTPSAQQIQQVTAHLsnygRIEGKNVFYWFQNHKARERQ 66
                           58*****************99**************************************97 PP
2Wus_type_Homeobox123.39.4e-40567264
      Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                           +++RW+PtpeQ++iLee+y+sG+rtP++++iq++ta+L++yG+ie+kNVfyWFQN+kaRerqk
  GSMUA_Achr8P02040_001  5 PSSRWCPTPEQLMILEEMYRSGVRTPSAQQIQQVTAHLSNYGRIEGKNVFYWFQNHKARERQK 67
                           589***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.657267IPR001356Homeobox domain
SMARTSM003891.3E-5471IPR001356Homeobox domain
SuperFamilySSF466892.74E-12470IPR009057Homeodomain-like
CDDcd000861.01E-4567No hitNo description
PfamPF000465.9E-19666IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-8766IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPQSPSSRWC PTPEQLMILE EMYRSGVRTP SAQQIQQVTA HLSNYGRIEG KNVFYWFQNH  60
KARERQKLRR RLSRHYQLLC SGHSLPHHQL YCMQDATAFP HSQHHATPTH SLHLVLHSHP  120
ALFLPSHQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412983.27e-68PREDICTED: WUSCHEL-related homeobox 3B-like
SwissprotA2XZR31e-38WOX2_ORYSI; Putative WUSCHEL-related homeobox 2
SwissprotQ9SIB47e-39WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLM0TLV62e-89M0TLV6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P02040_0013e-90(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-34WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]