PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P02150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 332aa    MW: 35118 Da    PI: 9.3193
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P02150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.5e-3867127262
                 zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                            +e  +kcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n++++
  GSMUA_Achr8P02150_001  67 PEPGQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTK 127
                            567899****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3551125IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.37671125IPR003851Zinc finger, Dof-type
PfamPF027011.2E-3171125IPR003851Zinc finger, Dof-type
PROSITE patternPS01361073109IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGFPSVPGYL DQPNWNQQQA HQQVSSSGVT CQLPPLMAAP QTEGGMVDSI RLGSMADRAR  60
FAKVPQPEPG QKCPRCDSTN TKFCYFNNYS LSQPRHFCKT CRRYWTRGGA LRNVPVGGGC  120
RRNRRTKSTA GSSSKFSTTA TQTGASSSSS SPATSSGLGG ATTSHVPFPS HLPFMASLHP  180
LPDFTSNNFA MSFSSIQPAN TMEYQLGGSS SSRGPFDGFG LETLRLQQIQ QFPLPGGLEL  240
PQPPPAAAGE GSGLLEGFIT GQAQTRRPNS GLITQLAKME DSQQLLDLPG RYLNASRNDQ  300
FWSGSSGGGS SSGAGGWATD LSGFNSSSGS IL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111124RNVPVGGGCRRNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685712.10.0PREDICTED: dof zinc finger protein DOF3.6-like isoform X1
TrEMBLM0TLW70.0M0TLW7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P02150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-47OBF-binding protein 3