PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P02260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 250aa    MW: 27874.9 Da    PI: 6.6022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P02260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-081663247
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                           g WT eE +l+  a   +  +   +W+++a++++ g+t +++  ++q +
  GSMUA_Achr8P02260_001 16 GGWTWEENKLFELALIDFEEDtpdRWEKVAACVP-GKTVEEVNIHYQRL 63
                           56******************9*************.***********986 PP
2Myb_DNA-binding45.51.8e-1481125347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +W++eE++l++ +   +G+g+W+ I+r + ++Rt+ q+ s+ qky
  GSMUA_Achr8P02260_001  81 PWSEEEHKLFLMGLSTHGKGDWRNISRNFVTTRTPTQVASHAQKY 125
                            8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.5391064IPR017877Myb-like domain
SMARTSM007171.2E-61466IPR001005SANT/Myb domain
SuperFamilySSF466895.96E-111670IPR009057Homeodomain-like
PfamPF002495.5E-61663IPR001005SANT/Myb domain
CDDcd001679.62E-61864No hitNo description
PROSITE profilePS5129418.6874130IPR017930Myb domain
SuperFamilySSF466891.44E-1675130IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-1577129IPR006447Myb domain, plants
SMARTSM007171.8E-1278128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1178127IPR009057Homeodomain-like
CDDcd001672.50E-1081126No hitNo description
PfamPF002493.3E-1281125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MTESTCSSRV PDRSGGGWTW EENKLFELAL IDFEEDTPDR WEKVAACVPG KTVEEVNIHY  60
QRLIDDLNAI EAGRSSKKGV PWSEEEHKLF LMGLSTHGKG DWRNISRNFV TTRTPTQVAS  120
HAQKYFNRQN SGGKDKRRSS IHDITIASLS HDELLAAARL RTPTPQAQAT STTLPRTFSL  180
QRNDAAGVSN APVRANQFMQ HQFGAAPYGM TMQVQNPQDA GLHGNVVCDD SSLFQMLSDQ  240
QIHGPDFGQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-141474767RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412979.20.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H74e-62DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0TLX80.0M0TLX8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P02260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-56Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]