PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P02370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 188aa    MW: 21171.6 Da    PI: 9.8161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P02370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-091866246
                           SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46
                           g+WT+eE +l+ +av++   +     +W+++a++++  +   +++s++++
  GSMUA_Achr8P02370_001 18 GNWTQEENKLFEHAVAKRRFDkdtpdRWEKVAAYIP-VKAVRDVVSHYRD 66
                           89**********************************.8899*******96 PP
2Myb_DNA-binding445.2e-14109155147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r +WT eE+ +++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky
  GSMUA_Achr8P02370_001 109 RVPWTDEEHWRFLLGLKKYGKGDWRNISRNLVTSRTPTQVASHAQKY 155
                            789*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-41670IPR001005SANT/Myb domain
PfamPF002495.7E-81766IPR001005SANT/Myb domain
PROSITE profilePS500906.3771868IPR017877Myb-like domain
SuperFamilySSF466894.16E-81874IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-41969IPR009057Homeodomain-like
CDDcd001672.64E-41965No hitNo description
Gene3DG3DSA:1.10.10.602.1E-11102157IPR009057Homeodomain-like
PROSITE profilePS5129419.311104160IPR017930Myb domain
SuperFamilySSF466892.08E-17105161IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17107158IPR006447Myb domain, plants
SMARTSM007176.4E-11108158IPR001005SANT/Myb domain
PfamPF002498.5E-11109155IPR001005SANT/Myb domain
CDDcd001674.79E-8111156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MASWFLGEKG GAGGIGTGNW TQEENKLFEH AVAKRRFDKD TPDRWEKVAA YIPVKAVRDV  60
VSHYRDSLDY VSEIEAGWVP CPGHDSSLSM QPPCVGGKRA ASDQERKKRV PWTDEEHWRF  120
LLGLKKYGKG DWRNISRNLV TSRTPTQVAS HAQKYFSRLE DKRSSGIHDS STAKLLDNRP  180
PSPSQSSS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6134961e-109JX613496.1 Gossypium hirsutum clone NBRI_GE56451 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018685700.11e-138PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-57DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0TLY91e-137M0TLY9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P02370_0011e-138(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-57MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]