PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr8P02640_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 236aa MW: 27118.4 Da PI: 4.96

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr8P02640_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.1	4.7e-14	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l+ +++G ++W+ Ia+ g++Rt+k+c+ rw +yl GSMUA_Achr8P02640_001 10 RGPWTEQEDLQLAWFAALFGERRWDFIAKVSGLNRTGKSCRMRWVNYL 57 89********************************************97 PP
2	Myb_DNA-binding	51.6	2.1e-16	64	108	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++ GSMUA_Achr8P02640_001 64 GRMTPQEECLILELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108 89*****************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.933	5	57	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-28	8	104	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-12	9	59	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-13	10	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-18	11	64	IPR009057	Homeodomain-like
CDD	cd00167	2.79E-8	12	57	No hit	No description
PROSITE profile	PS51294	24.553	58	112	IPR017930	Myb domain
SMART	SM00717	9.2E-16	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	64	107	IPR001005	SANT/Myb domain
CDD	cd00167	5.39E-11	65	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-22	65	111	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MVMVKEEMRR GPWTEQEDLQ LAWFAALFGE RRWDFIAKVS GLNRTGKSCR MRWVNYLHPS 60 LKHGRMTPQE ECLILELHSR WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK RAQEEKRSFS 120 PSRTTTSTSP ADDFPIGSEP RAEAAAGCQL SSSCMSLGLD EDSQGADWCS MDQAWNELAM 180 PEAIDGRSFD DCRESTTTAW PPSMPSPPMW ECCTASLWKT DEEEEEEELN GAAFGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-26	7	112	1	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	1e-25	7	112	55	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	1e-25	7	112	55	159	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009412539.1	1e-174	PREDICTED: myb-related protein MYBAS1-like
Refseq	XP_018686003.1	1e-174	PREDICTED: myb-related protein MYBAS1-like
Swissprot	Q53NK6	9e-76	MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBL	M0TM16	1e-173	M0TM16_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P02640_001	1e-174	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	3e-68	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]