PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P02800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 163aa    MW: 18288 Da    PI: 8.4845
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P02800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.41.2e-4361051100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +Ca+Ck+lrr+CakdC++apyfp ++p kfa+vhk+FGasnv+k+lk+l+ ++r da++slvyeA+ar++dP+yG+vgvi+ l+ q++
  GSMUA_Achr8P02800_001   6 PCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKVFGASNVSKMLKELSVHQRADAVRSLVYEANARMKDPIYGCVGVISYLEDQVS 93 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            ql+ +la++++e
  GSMUA_Achr8P02800_001  94 QLQMQLAVAQAE 105
                            ********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.3415106IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-426103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGGGSPCASC KLLRRRCAKD CIFAPYFPPD DPYKFAIVHK VFGASNVSKM LKELSVHQRA  60
DAVRSLVYEA NARMKDPIYG CVGVISYLED QVSQLQMQLA VAQAEILWIQ MQQAESSMAN  120
QQIIHAEDKS FVQHNSHTIV PQLMSFGSSS NGVREPLKRE RER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-4821077112LOB family transfactor Ramosa2.1
5ly0_B5e-4821077112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412520.11e-120PREDICTED: LOB domain-containing protein 12-like isoform X1
SwissprotQ8LBW33e-69LBD12_ARATH; LOB domain-containing protein 12
TrEMBLM0TM321e-119M0TM32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P02800_0011e-119(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-71LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]