PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P03550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 216aa    MW: 23014.9 Da    PI: 7.03
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P03550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98e-211665255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++aa+++++g
  GSMUA_Achr8P03550_001 16 HFRGVRKRP-WGRYAAEIRDPVK---KSRVWLGTFDTAEEAARAYDAAAREFRG 65
                           69*******.**********654...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.0261673IPR001471AP2/ERF domain
PfamPF008471.3E-131665IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-231674IPR016177DNA-binding domain
SMARTSM003802.0E-371679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-321673IPR001471AP2/ERF domain
CDDcd000181.53E-181673No hitNo description
PRINTSPR003674.2E-111728IPR001471AP2/ERF domain
PRINTSPR003674.2E-113955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLRLVDPNEN VCRREHFRGV RKRPWGRYAA EIRDPVKKSR VWLGTFDTAE EAARAYDAAA  60
REFRGPKAKT NFPFPDACIS PSPSPVGVAS GGGGSGSPSS QSSTIESSGP EEAARAPYHP  120
AIPAAQPLLF FNAIARSETS PVSEVAVTGY HRHLPLCPPM IVACFQPPPA VVAQSDSDSS  180
SVVDPPPDHR SPPPAPASKA FFLDLDLNLP PPAEVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-211574464ATERF1
3gcc_A5e-211574464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0968133e-42FP096813.1 Phyllostachys edulis cDNA clone: bphylf044i05, full insert sequence.
GenBankFP1010713e-42FP101071.1 Phyllostachys edulis cDNA clone: bphylf052m18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009412456.11e-89PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLM0TMA71e-152M0TMA7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P03550_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.14e-22erf domain protein 9